Mass Spectrometry Software Products & Reviews

Web-based Platform for Streamlined Lab Management

The all new Agilent MassHunter Workstation software provides intuitive, yet powerful, instrument control, data acquisition, qualitative and quantitative data analysis, and reporting for Agilent time-of-flight (TOF), quadrupole time-of-flight (Q-TOF), ICP-MS, and triple quadrupole systems. 

Mass Frontier 4.0 provides you with the tools required to transform mass spectral data into results – fast! The new Mass Frontier excels at predictive fragmentation and data management. Mass Frontier provides a mechanistic understanding of fragmentation schemes using proprietary mass spectral interpretation algorithms. In addition, relationships within datasets can be explored using various types of classification such as PCA,…

Xcalibur™ software is a flexible Windows® based data system that provides instrument control and data analysis for the entire family of Thermo Electron mass spectrometers and related instruments. Xcalibur's wide range of functionality and ability to integrate third-party control provides the tools to perform a wide range of applications. Several specialized software modules have been designed to work with Xcalibur to meet…

ProteinPilot software is a powerful, robust and intuitive software tool for protein identification and quantification for discovery research and protein characterization.  A paradigm shift in protein identification and relative protein expression analysis for protein research, ProteinPilot software streamlines protein identification and quantitation, enabling you to identify hundreds of peptide modifications and non-tryptic cl…

Acquire, Analyze, Manage, and Share Mass Spectrometry Information MassLynx™ Software increases the speed at which you can convert your sample data into valuable knowledge. It provides you with the fundamental platform to acquire, analyze, manage, and share your mass spectrometry information. MassLynx intelligently controls any Waters mass spectrometry system, from sample and solvent management components to mass spectrometer a…

Making MS operation easierfrom tuning to final report      The all new Agilent MassHunter Workstation software provides intuitive, yet powerful, instrument control, data acquisition, qualitative and quantitative data analysis, and reporting for Agilent time-of-flight (TOF), quadrupole time-of-flight (Q-TOF), ICP-MS, and triple quadrupole systems. Designed from the ground up to make MS analyses easierfrom tuning to final report…

Offers the most complete instrument control of Agilent LC, GC, CE, CE/MS, and LC/MS instruments systems you have now, with limited instrument control of other vendors’ systems. Plus, take full advantage of the advanced features of the Agilent GC and LC instruments you have now and new instruments, when released.

MasterView software is a powerful application that enables you to accurately screen unknown samples against the targeted list of compounds for quick identification, quantitation, and data review from complex mass spec data files. With MasterView software, laboratories can master the speed, power, and accuracy offered by LC-MS/MS technology. You can easily identify unknown compounds with greater confidence, using integrated lib…

BiopharmaLynx™ automates the processing and interpretation of biopharmaceutical product LC/MS data, enabling you to characterize your products. Developed with biopharmaceutical thought leaders for confident characterization and optimized workflow, BiopharmaLynx™ leverages Waters' leading protein informatics expertise. Determine the identity, purity and stability of biopharmaceuticals, working with either peptide maps or intac…

SEQUEST Cluster is a complete, preconfigured proteomics solution that enables accelerated throughput of increasingly complex, multidimensional informatics.Product detail:The SEQUEST Cluster offers a scalable solution for computing the large volumes of data typical in most proteomics analyses using LC/MS. Protein database search times are dramatically reduced by harnessing the power of several processing units in one, increasin…

DeNovoX software automates and accelerates sequencing, returning results equal to or better than those formerly achieved through expert manual sequencing of peptides within proteins and is ideally suited for high-throughput analyses of peptide mixtures. Product detail: DeNovoX is a fully-automated de novo sequencing software program that is capable of determining complete or partial amino acid sequences of unknown peptide…

LCquan 2.0 enabling 21 CRF Part 11 compliance. LCQUAN 2.0 is a closed, secure, multi-level user environment for mass spectral quantitative analysis. When LC Quan 2.0 is used in conjunction with Thermo's electronic Record Manager (eRM), this powerful combination provides the user with a completely secure data archival solution. Product detail: LCQUAN 2.0: Quantitation for the regulated laboratories Companies in regulated i…

Plasma Chromatographic Software   Agilent Technologies' Plasma Chromatographic Software (Plasma Chrom) enables seamless integration of the Agilent 7700 and 7500 Series ICP-MS with chromatography instrumentation. Developed by Agilent, this optional software features powerful integration, calibration and quantification capabilities for handling chromatographic data. Much more than just a data analysis package, the Agilent Plasma…

Agilent Mass Profiler Professional (MPP) software is a powerful chemometrics platform designed to exploit the high information content of MS data and can be used in any MS-based differential analysis to determine relationships among two or more sample groups and variables. 

The Agilent MassHunter METLIN Metabolomics Database and Library enable streamlined metabolite identification to facilitate understanding of global metabolic changes that can occur in a biological system. Available as a comprehensive database of metabolites (PCD) that optionally includes MS/MS spectra (PCDL).

Agilent Deconvolution Reporting Software (DRS) for GC/MS is an application for target compound analyses that combines results from the Agilent MSD Productivity ChemStation, the NIST Automated Mass Spectral Deconvolution and Identification Software (AMDIS), and the NIST 2008 Mass Spectral Search Program (NIST08) into one easy-to-read report. 

Mass Spectrometry Software for Spectral Interpretation and Component Characterization

Perform truly comprehensive mycotoxin screening applications with the Mycotoxins and Related Metabolites Personal Compound Database and Library (PCDL) for TOF and Q-TOF LC/MS systems. Detailed acquisition method setup information allows fast ramp-up to full productivity.

The Agilent Metabolomics dMRM Database and Method offers a comprehensive solution for targeted analysis of central carbon metabolites.

Profinder is a fast, batch-processing feature extraction software for differential analysis that supports data from Agilent GC/MSD, GC/Q-TOF, LC/TOF and LC/Q-TOF instruments. Profinder speeds up differential and flux analysis workflows using an intuitive user interface.

VistaFlux software features integrated programs for creating target lists, extracting batch isotopologues, and visualizing stable isotope label flux results on pathways. Turn weeks of manual data processing into just a few hours of work.

Confirm the sequence of proteins and post-translational modifications (PTMs), and characterize variants, before you start expensive testing.

Agilent's Walkup Software enables simplified access to the power and precision of high quality LC and LC/MS processes for multiple users.

Biomass Deconvolution is an Xcalibur layered application that enables users to perform commonly used standard tasks in the application of mass spectrometry to samples and analyses that contain biological molecules such as proteins, peptides, and oligonucleotides . The BioBrowser™ window contains commands and features specific for analyzing biological molecules including Biomass Calculation and Biomass Deconvolution.BIOMASS Cal…